Files

Module defining test data files.

filename(data, postfix=None)

Returns a test data file name.

Arguments

datastr

The type of the sample data to initialize. {‘vasculature’}

Returns

sourceSource

A data source of the sample data.

source(*args, **kwargs)

Initializes a test data source.

Arguments

As in filename()

Returns

sourceSource

A data source of the sample data.

base_directory = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests'

The base directory for test data.

data_directory = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data'

The base directory for test data.

skeleton = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Skeletonization/skeleton.npy'

Skeleton sample file.

skeleton_binary = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Skeletonization/binary.npy'

Binary sample data for skeleton generation.

skeleton_directory = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Skeletonization'

Directory for smaple data to test skeletonization.

temp = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/temp.npy'

Temporary file

tif_2d = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Tif/2d.tif'

2d tif file.

tif_2d_color = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Tif/2d_color.tif'

2d color tif file.

tif_3d = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Tif/3d.tif'

3d tif file.

tif_directory = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Tif'

Directory for tif sample data.

tif_sequence = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Tif/sequence'

tif file sequence.

vasculature_arteries_pre = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_arteries_pre.npy'

Vasculature sample data.

vasculature_arteries_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_arteries_raw.npy'

Vasculature sample data.

vasculature_directory = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature'

Directory for vasculature sample data.

vasculature_lightsheet_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_lightsheet_raw.npy'

Vasculature sample data.

vasculature_low_contrast_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_low_contrast_raw.npy'

Vasculature sample data.

vasculature_low_contrast_surface_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_low_contrast_surface_raw.npy'

Vasculature sample data.

vasculature_pre = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_pre.npy'

Vasculature sample data.

vasculature_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_raw.npy'

Vasculature sample data.

vasculature_surface_arteries_pre = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_surface_arteries_pre.npy'

Vasculature sample data.

vasculature_surface_arteries_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_surface_arteries_raw.npy'

Vasculature sample data.

vasculature_surface_pre = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_surface_pre.npy'

Vasculature sample data.

vasculature_surface_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_surface_raw.npy'

Vasculature sample data.

vasculature_weak_high_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_weak_high_raw.npy'

Vasculature sample data.

vasculature_weak_pre = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_weak_pre.npy'

Vasculature sample data.

vasculature_weak_raw = '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data/Vasculature/vasculature_weak_raw.npy'

Vasculature sample data.