Settings¶
Module to set ClearMap’s internal parameter and paths to external programs.
Note
Edit the setup()
routine to point to set paths for specific hosts.
-
setup
()[source]¶ Setup ClearMap settings for specific hosts.
Note
Edit this routine to include special setttings for specific hosts.
-
clearmap_path
= '/home/ckirst/Programs/ClearMap2/ClearMap'¶ Absolute path to the ClearMap’s root folder.
-
elastix_path
= '/home/ckirst/Programs/ClearMap2/ClearMap/External/elastix/build'¶ Absolue path to the elastix installation
Note
-
external_path
= '/home/ckirst/Programs/ClearMap2/ClearMap/External'¶ Absolute path to the ClearMap’s external program folder.
-
ilastik_path
= None¶ Absolute path to the Ilastik installation
Note
-
imagej_path
= None¶ Absolue path to the ImageJ/Fiji installation
Note
-
resources_path
= '/home/ckirst/Programs/ClearMap2/ClearMap/Resources'¶ Absolute path to the ClearMap’s resources folder.
-
tera_stitcher_path
= None¶ Absolue path to the TeraStitcher installation
Note
-
test_data_path
= '/home/ckirst/Programs/ClearMap2/ClearMap/Tests/Data'¶ Absolute path to the ClearMap’s test data folder.
-
test_path
= '/home/ckirst/Programs/ClearMap2/ClearMap/Tests'¶ Absolute path to the ClearMap’s test folder.