Alignment¶
Module to handle label and annotation info from Allen Brain Atlas (v2). |
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Interface to Elastix for alignment of volumetric data. |
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This module provides methods to resample and reorient data. |
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Stitching module for aligning and stitching data sets with ClearMap. |
This sub-package provides an interface to alignment tools in order to register cleared samples to atlases or reference samples.
Supported functionality:
stitching of tiles in a rigid or non-rigid wobbly fashion in the
Stitching
module.resampling and reorientation of large volumetric images in the
Resampling
module.registering volumetric data onto references via Elastix in the
Elastix
module.
All steps are demonstrated in the the TubeMap tutorial.
The main routines for resampling are
resample()
.
Main routines for elastix registration are
align()
and
transform()
.