Scripts

ClearMap.Scripts.CellMap	This script is the main pipeline to analyze immediate early gene expression data from iDISCO+ cleared tissue [Renier2016].
ClearMap.Scripts.TubeMap	This script is the main pipeline to generate annotated graphs from vascualture lightsheet data [Kirst2020].

Folder containing the main processing pipeline scripts.

Scripts include:

Script	Description
CellMap	Cell detection pipeline, e.g. for immediate early gene mapping
TubeMap	Vasculature network construction pipeline