Block

The Block module provides a Source class used in parallel processing of very large arrays in ClearMap.ParallelProcessing.BlockProcessing.

class Block(source=None, slicing=None, valid=None, valid_slicing=None, offsets=None, index=None, iteration=None, blocks_shape=None, neighbours=None, name=None)[source]

Bases: ClearMap.IO.Slice.Slice

Block source

A Block is a Slice with a sub-slice indicating the valid region to use when combining the results after block processing.

Each block has a index tuple that specifies its position in the grid of blocks in which the source was split into.

Each block also can carry a reference to its neighbouring blocks.

See also

ClearMap.ParallelProcessing.BlockProcessing

as_memory_block()[source]
as_real()[source]
as_virtual()[source]

Returns a virtual handle to this source striped of any big array data useful for parallel processing.

Returns

sourceSource class

The source class with out any cached array data.

Note

The slicing structure is kept here to be able to appropiately take slices in a source when processsing in parallel.

info(short=True)[source]

Return info string about this block within the grid of blocks.

Returns

infostr

Info string.

iteration_info()[source]

Return info string about the iteration of this block in the gird of blocks.

Returns

infostr

Info string.

property blocks_shape

Return the shape of the block grid this block belongs too.

Returns

shapetuple of ints

The shape of the grid of blocks this block is part of.

property index

Return the grid index of the block.

Returns

indextuple of ints

The multi index of this block in a grid of blocks.

property iteration

Return the index of this block in the lost of all blocks to process.

Returns

indextuple of ints

The multi index of this block in a grid of blocks.

property n_iterations

Returns the number of blocks in the grid to which this block belongs.

Returns

n_iterationsint or None

The number of blocks in the block grid.

property name

The name of this source.

Returns

namestr

Name of this source.

property neighbours

Returns the neighbours of this block.

Returns

neighboursdict or None

The neighbours of this block in the form {index : block,…} or None

property valid

Return the Slice souce of the valid region of this block.

Returns

validSlice

The valid slice of this block.