Connect¶
Module to Postprocess skeletonized vasculature data
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addConnections
(data, mask, skeleton, points, radius=20, start_points=None, remove_local_mask=True, min_quality=15.0, add_to_skeleton=True, add_to_mask=False, verbose=True, processes=8, block_size=5000, debug=False)[source]¶
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connectPoint
(data, mask, endpoints, start_index, radius, tubeness=None, min_quality=None, remove_local_mask=True, skeleton=None, verbose=False, **trace_parameter)[source]¶ Tries to connect an end point
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extractNeighbourhood
(data, center, radius)[source]¶ Extract local neighborhood with specific radius, if to close to border pad with zeros
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plotTracingResult
(path, data_nbh, mask_nbh, center, radius, tubeness_nbh, skeleton=None, distance_nbh=None)[source]¶