ClearMap package

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues obtained with Light Sheet microscopy.

The ClearMap code package is structured into four main modules:

  • IO for reading and writing images and data
  • Alignment for resampling, reorientation and registration of images onto references
  • Image Processing for correcting and quantifying the image data
  • Analysis for the statistical analysis of the data