ClearMap.Settings module

Module to set ClearMap’s internal parameter and paths to external programs.

Notes

Edit the setup() routine to point to the ilastik and elastix paths for specific hosts

See also

IlastikPath = '/usr/local/ilastik-1.1.9-Linux'

str: Absolute path to the Ilastik 0.5 installation

Notes

Ilastik Webpage

Ilastik 0.5 Download

ElastixPath = '/usr/local/elastix'

str: Absolue path to the elastix installation

Notes

Elastix Webpage

setup()[source]

Setup ClearMap for specific hosts

Notes

Edit this routine to include special setttings for specific hosts

See also

IlastikPath, ElastixPath

clearMapPath()[source]

Returns root path to the ClearMap software

Returns:str – root path to ClearMap
ClearMapPath = '/home/mtllab/Programs/ClearMap/idisco/ClearMap'

str: Absolute path to the ClearMap root folder